JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CITED2_chr6_139366807_139379648	0/0	t0012	1570	2	0	0	2	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0013	1570	2	0	1	0	1	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0014	1570	1	0	1	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0015	1570	1	0	0	1	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0016	1567	1	0	1	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0017	1570	1	0	0	1	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0018	1570	1	1	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0019	1570	1	0	0	1	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0020	1570	1	0	0	0	1	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0021	1570	1	1	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0022	1570	1	0	0	1	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0023	1570	1	0	0	0	0	1	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0024	1570	1	0	0	1	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0025	1567	1	1	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED4_chr1_40856054_40867363	0/1	t0001	756	161	54	24	55	6	21	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0002	756	161	14	30	112	0	5	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	1/0	t0003	756	103	14	18	41	10	19	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0004	756	6	6	0	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0005	756	2	0	0	0	0	2	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0006	756	1	0	0	0	0	1	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0007	756	1	0	0	1	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0008	756	1	1	0	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0009	756	1	0	0	1	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0010	756	1	1	0	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0011	756	1	0	0	1	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	t0012	751	1	0	0	1	0	0	copy fasta	CITED4	chr1	40856054	40867363
CIT_chr12_119680791_119882320	0/1	t0001	2526	70	18	9	31	2	9	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0002	2526	42	2	1	32	2	5	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0003	2525	35	23	6	1	1	4	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0004	2526	19	0	2	15	0	2	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0005	2526	12	8	3	0	0	1	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0006	2525	9	4	5	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0007	2526	7	7	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	1/0	t0008	2527	7	5	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0009	2527	5	3	1	0	0	1	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0010	2524	4	4	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0011	2525	4	2	2	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0012	2526	4	0	0	4	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0013	2527	3	0	2	0	1	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0014	2525	2	2	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0015	2526	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0016	2524	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0017	2524	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0018	2525	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0019	2525	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0020	2526	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0021	2526	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0022	2527	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0023	2527	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0024	2526	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320