JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIT_chr12_119680791_119882320	0/0	t0025	2526	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0026	2527	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	t0027	2526	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIZ1_chr9_128161065_128196572	1/1	t0001	279	380	88	60	176	14	40	copy fasta	CIZ1	chr9	128161065	128196572
CKAP2L_chr2_112731349_112769609	0/0	t0001	2486	130	33	28	50	7	12	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/1	t0002	2486	93	7	24	48	3	10	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0003	2486	14	14	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	1/0	t0004	2486	10	4	5	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0005	2486	7	7	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0006	2483	7	7	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0007	2482	6	0	0	6	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0008	2486	4	3	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0009	2486	4	4	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0010	2479	3	3	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0011	2486	3	3	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0012	2483	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0013	2486	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0014	2486	2	1	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0015	2486	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0016	2483	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0017	2486	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0018	2486	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0019	2486	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0020	2486	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0021	2486	1	0	0	1	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0022	2486	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0023	2486	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0024	2486	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0025	2486	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	t0026	2486	1	0	0	1	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2_chr13_52450478_52481627	0/0	t0001	1566	204	21	52	107	7	17	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	1/1	t0002	1566	156	38	21	65	6	24	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0003	1566	24	19	2	0	1	2	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0004	1566	11	9	2	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0005	1566	3	2	0	0	0	1	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0006	1566	2	0	0	2	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0007	1566	2	2	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0008	1566	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0009	1566	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0010	1566	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	t0011	1566	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP4_chr12_106232881_106253020	1/0	t0001	1313	141	25	40	55	4	16	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0002	1315	87	13	5	57	3	9	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0003	1316	48	8	10	20	3	7	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/1	t0004	1312	24	8	6	2	4	3	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0005	1314	22	2	1	17	0	2	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0006	1317	10	3	1	3	0	3	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0007	1318	7	5	0	2	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0008	1313	7	7	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0009	1316	7	2	1	0	1	3	copy fasta	CKAP4	chr12	106232881	106253020