JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CKAP4_chr12_106232881_106253020	0/0	t0010	1317	5	5	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0011	1317	5	1	1	0	0	3	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0012	1313	5	0	4	0	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0013	1312	4	0	1	2	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0014	1314	4	3	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0015	1315	2	0	0	2	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0016	1313	2	0	0	2	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0017	1315	2	0	0	2	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0018	1314	2	0	2	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0019	1315	2	2	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0020	1316	2	0	0	2	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0021	1315	2	1	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0022	1312	2	2	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0023	1311	2	0	2	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0024	1315	2	2	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0025	1313	2	2	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0026	1316	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0027	1314	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0028	1315	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0029	1313	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0030	1313	1	0	0	0	1	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0031	1313	1	0	0	0	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0032	1315	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0033	1316	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0034	1314	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0035	1312	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0036	1316	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0037	1316	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0038	1317	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0039	1316	1	0	0	0	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0040	1314	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0041	1314	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0042	1314	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0043	1312	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0044	1315	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	t0045	1313	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP5_chr11_46738048_46851280	0/0	t0001	1069	164	54	35	59	6	10	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/1	t0002	1074	73	1	16	49	1	5	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	1/0	t0003	1074	46	33	6	0	1	5	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0004	1074	5	0	0	5	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0005	1069	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0006	1074	1	0	0	1	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0007	1074	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0008	1069	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0009	1069	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	t0010	1069	1	0	1	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKB_chr14_103514667_103527830	1/1	t0001	275	426	95	82	191	10	46	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	t0002	275	1	0	0	1	0	0	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	t0003	275	1	1	0	0	0	0	copy fasta	CKB	chr14	103514667	103527830
CKLF_chr16_66547576_66571068	1/1	t0001	198	390	94	68	174	16	36	copy fasta	CKLF	chr16	66547576	66571068