JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CKLF_chr16_66547576_66571068	0/0	t0002	198	1	1	0	0	0	0	copy fasta	CKLF	chr16	66547576	66571068
CKLF_chr16_66547576_66571068	0/0	t0003	198	1	1	0	0	0	0	copy fasta	CKLF	chr16	66547576	66571068
CKMT1A_chr15_43688859_43704222	0/0	t0001	326	384	72	70	185	16	41	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	t0002	326	4	0	0	3	0	1	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	t0003	326	3	3	0	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	t0004	326	1	1	0	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1B_chr15_43589027_43604406	0/0	t0001	326	231	32	52	105	13	29	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	t0002	326	97	48	12	26	1	10	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	t0003	326	16	0	0	16	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	t0004	326	1	1	0	0	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	t0005	326	1	1	0	0	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	t0006	326	1	0	0	1	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	t0007	326	1	0	0	0	0	1	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT2_chr5_81228322_81271398	1/1	t0001	217	261	59	33	138	8	21	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	t0002	217	86	32	21	11	7	15	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	t0003	217	8	0	0	5	1	2	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	t0004	217	1	1	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKM_chr19_45301413_45327875	1/1	t0001	411	364	77	73	150	18	44	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	t0002	411	9	0	0	9	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	t0003	411	7	6	1	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	t0004	411	6	6	0	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	t0005	411	5	5	0	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	t0006	411	1	0	0	1	0	0	copy fasta	CKM	chr19	45301413	45327875
CKS1B_chr1_154969681_154984251	1/1	t0001	540	282	87	51	94	11	37	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	t0002	540	4	3	1	0	0	0	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	t0003	540	2	2	0	0	0	0	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	t0004	540	1	0	0	0	1	0	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	t0005	540	1	1	0	0	0	0	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	t0006	540	1	1	0	0	0	0	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	t0007	540	1	0	0	0	0	1	copy fasta	CKS1B	chr1	154969681	154984251
CKS2_chr9_89306195_89321703	1/1	t0001	377	374	86	48	183	15	40	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0002	377	54	3	17	26	3	5	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0003	377	3	0	0	3	0	0	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0004	377	3	3	0	0	0	0	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0005	377	3	1	2	0	0	0	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0006	377	1	1	0	0	0	0	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0007	377	1	0	0	0	0	1	copy fasta	CKS2	chr9	89306195	89321703
CKS2_chr9_89306195_89321703	0/0	t0008	377	1	0	1	0	0	0	copy fasta	CKS2	chr9	89306195	89321703
CLASP1_chr2_121332776_121654462	0/1	t0001	3461	30	6	6	16	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0002	3461	15	0	2	11	0	2	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	1/0	t0003	3462	9	2	4	2	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0004	3463	9	1	1	7	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0005	3465	7	6	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0006	3465	7	7	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0007	3459	7	0	0	7	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0008	3457	6	5	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0009	3469	6	0	0	6	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0010	3471	6	1	0	4	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0011	3461	5	3	1	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0012	3461	5	1	2	1	0	1	copy fasta	CLASP1	chr2	121332776	121654462