JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLASP1_chr2_121332776_121654462	0/0	t0063	3470	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0064	3470	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0065	3469	1	0	0	0	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0066	3470	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0067	3471	1	0	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0068	3468	1	0	0	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0069	3470	1	0	0	0	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0070	3469	1	0	0	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0071	3468	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0072	3468	1	0	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0073	3471	1	0	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0074	3478	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0075	3481	1	0	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0076	3469	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0077	3461	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0078	3463	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0079	3465	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0080	3472	1	0	0	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0081	3454	1	0	1	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	t0082	3463	1	0	0	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP2_chr3_33491245_33723254	1/0	t0001	2639	126	41	18	48	5	13	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/1	t0002	2639	62	15	16	21	5	4	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0003	2639	49	1	9	32	2	5	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0004	2639	11	11	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0005	2635	7	7	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0006	2639	5	0	2	0	2	1	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0007	2639	4	0	2	0	0	2	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0008	2639	4	0	3	0	0	1	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0009	2639	2	0	2	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0010	2639	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0011	2639	1	1	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0012	2639	1	1	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0013	2639	1	1	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0014	2639	1	1	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0015	2639	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0016	2639	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	t0017	2639	1	1	0	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASRP_chr19_45034045_45075956	1/1	t0001	205	361	96	69	144	10	40	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	t0002	205	3	2	1	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLBA1_chr14_104980788_105000516	1/1	t0001	1402	245	20	48	138	10	27	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0002	1430	100	31	16	42	4	7	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0003	1430	17	7	6	3	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0004	1430	16	15	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0005	1430	15	0	0	13	0	2	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0006	1402	12	2	3	6	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0007	1430	8	7	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0008	1402	4	3	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0009	1402	4	0	0	1	0	3	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0010	1430	4	0	0	4	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0011	1398	3	3	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516