JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLBA1_chr14_104980788_105000516	0/0	t0012	1402	2	0	0	0	0	2	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0013	1402	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0014	1402	1	0	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0015	1402	1	1	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0016	1402	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0017	1402	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0018	1402	1	0	0	1	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0019	1402	1	0	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0020	1402	1	0	0	1	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0021	1431	1	0	0	1	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0022	1430	1	1	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0023	1426	1	1	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0024	1430	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0025	1430	1	1	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	t0026	1402	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLCA1_chr1_86463927_86505259	1/1	t0001	260	366	95	63	146	14	46	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	t0002	259	73	2	19	50	0	2	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	t0003	260	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA2_chr1_86419171_86461553	1/1	t0001	1104	323	47	51	179	10	34	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0002	1104	30	9	9	8	0	4	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0003	1104	21	7	4	4	2	4	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0004	1104	16	8	8	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0005	1104	14	13	1	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0006	1104	5	0	0	5	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0007	1104	4	3	1	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	t0008	1104	1	1	0	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA4_chr1_86542078_86585754	1/0	t0001	452	298	85	43	122	13	34	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/1	t0002	452	30	2	9	15	1	2	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	t0003	452	4	4	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	t0004	452	1	1	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	t0005	420	1	0	0	1	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCC1_chr1_108924505_108968484	1/0	t0001	3339	155	26	38	66	7	17	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0002	3339	94	4	10	68	3	9	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0003	3339	14	9	1	0	2	2	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0004	3339	13	12	1	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0005	3339	10	1	9	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0006	3344	9	1	0	3	0	5	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0007	3343	9	0	0	9	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0008	3338	8	4	4	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0009	3339	8	0	1	5	2	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0010	3339	7	7	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0011	3340	6	6	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0012	3339	5	3	0	0	2	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0013	3344	4	0	0	1	0	3	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0014	3339	4	0	0	3	0	1	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0015	3340	4	0	2	0	0	2	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0016	3334	3	3	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0017	3339	3	2	0	0	1	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0018	3339	3	2	1	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0019	3339	2	0	0	2	0	0	copy fasta	CLCC1	chr1	108924505	108968484