JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLCC1_chr1_108924505_108968484	0/0	t0020	3339	2	2	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0021	3340	2	2	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0022	3340	2	1	1	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0023	3340	2	2	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0024	3340	2	2	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0025	3340	2	0	0	1	0	1	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0026	3338	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0027	3339	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0028	3339	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0029	3344	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0030	3339	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0031	3339	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0032	3206	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0033	3339	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0034	3339	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/1	t0035	3339	1	0	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0036	3339	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0037	3339	1	0	1	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0038	3339	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0039	3339	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0040	3339	1	0	1	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0041	3339	1	0	0	0	1	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0042	3340	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0043	3340	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0044	3342	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0045	3340	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	t0046	3340	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCF1_chr11_67359168_67378598	1/1	t0001	1028	290	74	56	117	8	33	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	t0002	1028	13	13	0	0	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	t0003	1028	2	2	0	0	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	t0004	1028	1	1	0	0	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	t0005	1028	1	0	0	1	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	t0006	1028	1	0	0	0	0	1	copy fasta	CLCF1	chr11	67359168	67378598
CLCN1_chr7_143311111_143357083	1/1	t0001	221	399	99	69	173	15	41	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	t0002	221	7	0	5	2	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	t0003	221	7	1	2	0	3	1	copy fasta	CLCN1	chr7	143311111	143357083
CLCN1_chr7_143311111_143357083	0/0	t0004	221	1	0	0	1	0	0	copy fasta	CLCN1	chr7	143311111	143357083
CLCN2_chr3_184341185_184366605	1/1	t0001	548	445	98	68	213	14	50	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0002	548	5	0	5	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0003	548	2	0	0	0	2	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0004	548	2	0	0	2	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0005	548	2	2	0	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0006	548	1	0	0	0	1	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0007	548	1	0	0	1	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0008	548	1	0	1	0	0	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN2_chr3_184341185_184366605	0/0	t0009	548	1	0	0	0	1	0	copy fasta	CLCN2	chr3	184341185	184366605
CLCN3_chr4_169615578_169728673	0/0	t0001	4175	86	13	21	39	2	11	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0002	4179	49	1	7	33	3	5	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0003	4178	24	8	2	7	3	4	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0004	4178	15	13	2	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673