JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLCN3_chr4_169615578_169728673	1/0	t0005	4179	14	12	1	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0006	4180	8	8	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/1	t0007	4195	8	2	1	0	3	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0008	4177	6	4	1	1	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0009	4176	5	5	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0010	4193	5	0	3	0	0	2	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0011	4168	4	4	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0012	4185	4	4	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0013	4189	4	0	1	1	1	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0014	4191	4	0	2	0	1	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0015	4176	3	3	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0016	4197	3	0	0	1	0	2	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0017	4179	3	0	2	0	1	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0018	4175	2	0	1	0	1	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0019	4174	2	0	2	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0020	4178	2	2	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0021	4177	2	0	0	2	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0022	4180	2	2	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0023	4180	2	1	1	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0024	4199	2	0	0	0	0	2	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0025	4180	2	2	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0026	4175	1	0	0	1	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0027	4192	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0028	4200	1	0	1	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0029	4164	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0030	4175	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0031	4175	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0032	4175	1	0	0	0	1	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0033	4179	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0034	4179	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0035	4178	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0036	4179	1	0	0	1	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0037	4182	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0038	4181	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0039	4180	1	0	0	1	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0040	4181	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0041	4181	1	0	1	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0042	4181	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0043	4182	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0044	4189	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0045	4191	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0046	4199	1	0	0	1	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0047	4205	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0048	4207	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0049	4178	1	0	0	0	0	1	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0050	4179	1	0	1	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0051	4177	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN3_chr4_169615578_169728673	0/0	t0052	4194	1	1	0	0	0	0	copy fasta	CLCN3	chr4	169615578	169728673
CLCN4_chrX_10151975_10242660	0/1	t0001	4478	69	1	18	39	3	7	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0002	4477	48	20	6	19	1	2	copy fasta	CLCN4	chrX	10151975	10242660