Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCY2_chr5_7391138_7835081	1/0	t0002	3370	28	6	8	7	0	6	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0003	3369	12	11	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0004	3370	8	7	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0005	3369	8	4	1	2	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0006	3369	6	6	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0007	3369	5	5	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0008	3369	4	3	0	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0009	3369	3	3	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0010	3370	3	2	0	1	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0011	3370	3	0	3	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0012	3370	2	0	2	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0013	3369	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0014	3369	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0015	3370	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0016	3369	1	0	0	1	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0017	3370	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0018	3369	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0019	3369	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	t0020	3370	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY3_chr2_24814169_24925237	0/1	t0001	1516	107	18	22	50	3	13	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	1/0	t0002	1516	34	27	2	2	1	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0003	1516	34	12	12	6	2	2	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0004	1516	30	2	6	15	4	3	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0005	1520	26	4	2	18	0	2	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0006	1516	10	3	5	0	1	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0007	1516	5	5	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0008	1520	5	2	2	0	0	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0009	1516	4	3	1	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0010	1516	2	0	1	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0011	1516	2	2	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0012	1516	2	2	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0013	1516	2	0	0	0	0	2	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0014	1516	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0015	1516	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0016	1516	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0017	1516	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0018	1516	1	0	0	0	0	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0019	1516	1	0	0	0	1	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0020	1538	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0021	1516	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	t0022	1516	1	0	1	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY4_chr14_24313359_24340071	0/1	t0001	477	158	34	9	96	2	16	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0002	477	98	5	31	38	8	16	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0003	477	92	4	26	50	4	8	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	1/0	t0004	477	66	40	5	15	2	3	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0005	477	15	0	2	10	0	3	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0006	477	4	4	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0007	477	3	0	1	2	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0008	477	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	t0009	477	1	1	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071