JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLCN4_chrX_10151975_10242660	0/0	t0003	4477	44	0	5	24	2	13	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	1/0	t0004	4477	41	20	11	0	7	2	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0005	4478	5	5	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0006	4477	5	5	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0007	4477	4	0	4	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0008	4477	4	3	1	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0009	4477	4	3	1	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0010	4477	3	0	2	0	0	1	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0011	4477	3	0	0	3	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0012	4477	2	2	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0013	4477	2	2	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0014	4478	2	0	0	2	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0015	4477	2	1	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0016	4478	2	2	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0017	4477	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0018	4477	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0019	4477	1	0	1	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0020	4477	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0021	4477	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0022	4478	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0023	4477	1	0	0	0	0	1	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0024	4477	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0025	4477	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0026	4477	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0027	4476	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0028	4477	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0029	4477	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0030	4478	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0031	4478	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0032	4477	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0033	4478	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0034	4477	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0035	4480	1	0	0	1	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0036	4477	1	0	0	0	0	1	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0037	4475	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0038	4475	1	1	0	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0039	4477	1	0	0	0	0	1	copy fasta	CLCN4	chrX	10151975	10242660
CLCN4_chrX_10151975_10242660	0/0	t0040	4477	1	0	1	0	0	0	copy fasta	CLCN4	chrX	10151975	10242660
CLCN5_chrX_49917596_50104230	1/0	t0001	7413	117	21	17	60	4	14	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0002	7413	11	11	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0003	7413	9	8	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0004	7413	5	5	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0005	7413	5	4	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0006	7413	2	0	0	2	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0007	7413	2	0	1	0	0	1	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0008	7413	2	0	2	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0009	7413	2	2	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0010	7413	2	2	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/1	t0011	7413	2	0	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0012	7413	1	0	0	0	1	0	copy fasta	CLCN5	chrX	49917596	50104230