JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLCN5_chrX_49917596_50104230	0/0	t0013	7413	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0014	7413	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0015	7413	1	0	0	0	0	1	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0016	7416	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0017	7412	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0018	7413	1	0	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0019	7417	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0020	7413	1	0	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0021	7412	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0022	7413	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0023	7412	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0024	7413	1	0	1	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0025	7413	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0026	7413	1	0	0	1	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN5_chrX_49917596_50104230	0/0	t0027	7413	1	1	0	0	0	0	copy fasta	CLCN5	chrX	49917596	50104230
CLCN6_chr1_11801191_11848130	1/0	t0001	2980	175	43	33	75	5	18	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/1	t0002	2980	41	1	10	15	3	11	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0003	2980	14	6	4	1	1	2	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0004	2980	8	8	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0005	2980	7	2	0	1	1	3	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0006	2980	7	6	1	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0007	2980	5	0	1	1	0	3	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0008	2980	4	4	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0009	2980	4	4	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0010	2980	3	3	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0011	2980	2	0	2	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0012	2980	2	2	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0013	2980	1	0	0	0	0	1	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0014	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0015	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0016	2980	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0017	2980	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0018	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0019	2980	1	0	0	0	0	1	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0020	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0021	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0022	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0023	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0024	2980	1	0	1	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0025	2980	1	0	0	1	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0026	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0027	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0028	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0029	2980	1	1	0	0	0	0	copy fasta	CLCN6	chr1	11801191	11848130
CLCN6_chr1_11801191_11848130	0/0	t0030	2980	1	0	0	0	0	1	copy fasta	CLCN6	chr1	11801191	11848130
CLCN7_chr16_1439935_1480028	0/1	t0001	1751	171	12	26	110	3	19	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0002	1751	65	13	20	12	8	12	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0003	1751	25	7	2	11	0	5	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0004	1752	23	11	5	5	0	2	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0005	1751	13	4	3	2	2	2	copy fasta	CLCN7	chr16	1439935	1480028