JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLCN7_chr16_1439935_1480028	0/0	t0006	1751	7	6	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0007	1751	7	0	0	6	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0008	1751	7	5	2	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0009	1751	7	0	0	7	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0010	1751	6	1	4	0	1	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0011	1751	5	0	0	0	2	3	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0012	1751	4	0	0	3	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0013	1751	4	3	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0014	1751	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0015	1752	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0016	1752	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0017	1749	3	2	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0018	1751	3	3	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	1/0	t0019	1751	2	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0020	1751	2	0	0	2	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0021	1751	2	0	0	2	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0022	1751	2	0	1	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0023	1751	2	0	2	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0024	1752	2	0	1	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0025	1753	2	0	2	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0026	1753	2	2	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0027	1751	2	2	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0028	1752	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0029	1748	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0030	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0031	1751	1	0	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0032	1751	1	0	0	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0033	1751	1	0	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0034	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0035	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0036	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0037	1751	1	0	0	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0038	1751	1	0	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0039	1752	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0040	1752	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0041	1751	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0042	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0043	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0044	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0045	1752	1	0	0	0	0	1	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0046	1752	1	0	0	1	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0047	1751	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0048	1752	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0049	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0050	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0051	1752	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0052	1751	1	0	1	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0053	1748	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCN7_chr16_1439935_1480028	0/0	t0054	1751	1	1	0	0	0	0	copy fasta	CLCN7	chr16	1439935	1480028
CLCNKA_chr1_16017036_16039050	0/0	t0001	428	180	55	21	87	2	15	copy fasta	CLCNKA	chr1	16017036	16039050