JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLCNKA_chr1_16017036_16039050	1/1	t0002	428	160	21	46	57	11	23	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0003	428	25	3	2	11	2	7	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0004	428	17	9	5	2	0	1	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0005	428	3	2	0	1	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0006	428	3	2	1	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0007	428	2	2	0	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0008	428	1	0	0	0	1	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKA_chr1_16017036_16039050	0/0	t0009	428	1	0	1	0	0	0	copy fasta	CLCNKA	chr1	16017036	16039050
CLCNKB_chr1_16038782_16062308	0/0	t0001	499	159	10	18	113	3	15	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0002	499	73	39	21	0	5	8	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/1	t0003	499	49	2	26	0	8	12	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0004	499	47	3	8	31	0	5	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0005	499	39	2	3	27	1	6	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0006	499	27	19	5	1	1	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0007	499	9	1	3	5	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0008	499	6	6	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0009	499	5	5	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0010	499	4	3	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0011	499	2	2	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0012	499	2	1	0	0	0	1	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0013	499	2	1	1	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	1/0	t0014	499	1	0	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0015	499	1	0	0	1	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0016	499	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLCNKB_chr1_16038782_16062308	0/0	t0017	499	1	1	0	0	0	0	copy fasta	CLCNKB	chr1	16038782	16062308
CLC_chr19_39726255_39743029	1/1	t0001	203	442	100	80	206	18	36	copy fasta	CLC	chr19	39726255	39743029
CLDN10_chr13_95547720_95584759	1/1	t0001	1780	257	29	52	140	10	24	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0002	1780	83	23	10	29	6	15	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0003	1780	22	21	1	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0004	1780	14	0	2	12	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0005	1780	7	0	0	7	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0006	1780	5	5	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0007	1778	4	4	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0008	1780	4	4	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0009	1780	1	0	1	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0010	1780	1	1	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0011	1780	1	0	0	0	0	1	copy fasta	CLDN10	chr13	95547720	95584759
CLDN10_chr13_95547720_95584759	0/0	t0012	1780	1	1	0	0	0	0	copy fasta	CLDN10	chr13	95547720	95584759
CLDN11_chr3_170413868_170439691	1/0	t0001	2135	118	27	22	49	4	15	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0002	2135	63	7	16	32	3	5	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0003	2134	40	0	4	35	0	1	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0004	2136	38	11	2	22	0	3	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0005	2132	33	21	9	0	0	3	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0006	2132	22	0	2	17	0	3	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0007	2135	14	0	4	8	1	1	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0008	2134	14	3	7	2	1	1	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0009	2131	10	10	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0010	2136	8	0	2	4	0	2	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0011	2135	5	5	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0012	2136	4	1	0	2	0	1	copy fasta	CLDN11	chr3	170413868	170439691