JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN11_chr3_170413868_170439691	0/0	t0013	2136	4	3	1	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0014	2133	3	0	0	3	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0015	2134	3	3	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0016	2135	2	0	0	2	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0017	2134	2	0	1	1	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0018	2131	2	0	0	2	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0019	2133	2	0	1	0	0	1	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0020	2135	2	0	1	0	1	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0021	2136	2	1	1	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0022	2135	1	0	0	0	0	1	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0023	2133	1	0	1	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/1	t0024	2134	1	0	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0025	2135	1	0	0	1	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0026	2135	1	0	0	1	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0027	2136	1	0	0	1	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0028	2123	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0029	2130	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0030	2131	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0031	2133	1	0	0	1	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0032	2132	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0033	2135	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0034	2135	1	0	0	0	0	1	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0035	2136	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0036	2136	1	0	0	1	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0037	2135	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN11_chr3_170413868_170439691	0/0	t0038	2136	1	1	0	0	0	0	copy fasta	CLDN11	chr3	170413868	170439691
CLDN12_chr7_90398461_90420954	0/0	t0001	2799	158	33	36	56	11	22	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/1	t0002	2799	134	13	26	86	0	8	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0003	2799	45	5	2	34	0	4	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	1/0	t0004	2799	19	5	5	1	1	6	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0005	2799	13	8	0	3	0	2	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0006	2799	7	5	1	0	1	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0007	2799	7	7	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0008	2799	5	4	1	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0009	2799	4	3	1	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0010	2799	3	1	1	0	0	1	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0011	2799	3	3	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0012	2799	2	0	2	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0013	2799	2	2	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0014	2799	2	2	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0015	2799	2	0	2	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0016	2799	1	0	1	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0017	2799	1	1	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0018	2799	1	0	0	0	0	1	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0019	2799	1	1	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0020	2799	1	1	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0021	2799	1	1	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0022	2799	1	0	0	0	1	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN12_chr7_90398461_90420954	0/0	t0023	2799	1	1	0	0	0	0	copy fasta	CLDN12	chr7	90398461	90420954
CLDN14_chr21_36455621_36485122	1/1	t0001	1065	273	24	49	155	11	32	copy fasta	CLDN14	chr21	36455621	36485122