JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN14_chr21_36455621_36485122	0/0	t0002	1065	122	59	20	30	2	11	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0003	1065	7	2	5	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0004	1065	4	4	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0005	1065	3	3	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0006	1065	3	3	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0007	1065	2	0	0	2	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0008	1065	1	0	0	0	0	1	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0009	1065	1	0	0	0	0	1	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0010	1065	1	1	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0011	1065	1	1	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0012	1065	1	0	0	0	1	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0013	1065	1	1	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0014	1065	1	0	0	0	0	1	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0015	1065	1	1	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0016	1065	1	1	0	0	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN14_chr21_36455621_36485122	0/0	t0017	1065	1	0	0	1	0	0	copy fasta	CLDN14	chr21	36455621	36485122
CLDN15_chr7_101227094_101242802	1/1	t0001	538	367	89	56	164	14	42	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	t0002	538	29	5	1	21	0	2	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	t0003	538	2	0	0	0	2	0	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	t0004	538	2	0	0	0	0	2	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	t0005	538	1	0	1	0	0	0	copy fasta	CLDN15	chr7	101227094	101242802
CLDN15_chr7_101227094_101242802	0/0	t0006	538	1	0	0	1	0	0	copy fasta	CLDN15	chr7	101227094	101242802
CLDN16_chr3_190383163_190417138	0/0	t0001	2270	197	47	29	98	6	17	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	1/1	t0002	2270	98	1	18	63	5	9	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0003	2270	53	23	7	14	0	9	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0004	2269	33	6	9	7	5	6	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0005	2270	13	0	7	2	2	2	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0006	2270	8	0	0	8	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0007	2253	5	4	1	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0008	2270	4	0	0	4	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0009	2270	4	2	2	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0010	2270	3	1	1	1	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0011	2270	3	3	0	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0012	2270	3	3	0	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0013	2270	3	0	0	0	0	3	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0014	2269	2	0	1	0	0	1	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0015	2270	2	0	1	0	0	1	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0016	2270	2	2	0	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0017	2269	1	1	0	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0018	2270	1	0	0	1	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0019	2270	1	0	0	1	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0020	2270	1	0	0	1	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN16_chr3_190383163_190417138	0/0	t0021	2270	1	1	0	0	0	0	copy fasta	CLDN16	chr3	190383163	190417138
CLDN17_chr21_30160565_30171805	1/1	t0001	567	390	59	69	200	18	42	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	t0002	567	37	28	5	2	0	2	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	t0003	567	5	5	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	t0004	567	2	0	0	2	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	t0005	567	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN17_chr21_30160565_30171805	0/0	t0006	567	1	1	0	0	0	0	copy fasta	CLDN17	chr21	30160565	30171805
CLDN18_chr3_138005165_138038649	0/0	t0001	2570	111	10	27	53	7	14	copy fasta	CLDN18	chr3	138005165	138038649