JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN18_chr3_138005165_138038649	1/0	t0002	2570	101	18	11	55	5	11	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/1	t0003	2570	80	6	20	41	3	9	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0004	2570	28	17	0	8	0	3	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0005	2571	23	6	7	5	2	3	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0006	2570	18	15	3	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0007	2570	10	6	4	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0008	2571	6	5	1	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0009	2570	3	3	0	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0010	2570	2	1	1	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0011	2571	2	0	0	2	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0012	2571	1	0	0	0	1	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0013	2571	1	0	1	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0014	2570	1	0	0	1	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0015	2570	1	1	0	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0016	2570	1	1	0	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0017	2570	1	1	0	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0018	2571	1	0	0	1	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0019	2570	1	1	0	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0020	2570	1	1	0	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN18_chr3_138005165_138038649	0/0	t0021	2570	1	0	1	0	0	0	copy fasta	CLDN18	chr3	138005165	138038649
CLDN19_chr1_42728093_42745236	0/0	t0001	2167	177	31	31	85	10	20	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	1/1	t0002	2167	165	38	25	82	4	14	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0003	2167	49	7	8	26	3	5	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0004	2167	9	6	3	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0005	2167	4	3	1	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0006	2167	3	0	1	0	0	2	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0007	2166	3	2	1	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0008	2167	2	0	0	0	0	2	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0009	2167	1	0	0	0	1	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0010	2166	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0011	2166	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0012	2166	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0013	2167	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0014	2167	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0015	2167	1	0	1	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0016	2167	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0017	2166	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0018	2167	1	0	0	1	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0019	2167	1	0	1	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0020	2167	1	0	0	0	0	1	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0021	2167	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0022	2167	1	0	0	1	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0023	2167	1	0	0	1	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN19_chr1_42728093_42745236	0/0	t0024	2167	1	1	0	0	0	0	copy fasta	CLDN19	chr1	42728093	42745236
CLDN1_chr3_190300707_190327446	0/0	t0001	2811	98	3	5	84	0	6	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	1/0	t0002	2811	54	3	14	24	4	8	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0003	2811	40	2	11	12	3	12	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0004	2811	37	3	7	21	1	5	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0005	2811	26	10	1	15	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0006	2811	24	4	9	9	2	0	copy fasta	CLDN1	chr3	190300707	190327446