JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN1_chr3_190300707_190327446	0/0	t0007	2811	22	19	3	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0008	2811	18	0	9	6	2	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0009	2811	16	14	1	0	1	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0010	2811	15	5	0	10	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0011	2811	12	0	0	8	1	3	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/1	t0012	2811	12	0	8	1	0	2	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0013	2811	9	0	0	9	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0014	2811	7	2	4	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0015	2811	6	5	0	0	1	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0016	2811	4	1	2	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0017	2811	4	4	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0018	2811	4	0	2	0	1	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0019	2811	4	2	0	0	0	2	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0020	2811	4	4	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0021	2811	4	3	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0022	2811	4	0	0	4	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0023	2811	3	0	0	0	0	3	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0024	2811	3	3	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0025	2811	3	1	2	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0026	2811	2	0	2	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0027	2811	2	0	0	0	1	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0028	2811	2	0	2	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0029	2811	2	0	0	0	0	2	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0030	2811	2	2	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0031	2811	1	0	0	0	0	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0032	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0033	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0034	2811	1	0	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0035	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0036	2811	1	0	0	0	0	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0037	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0038	2811	1	0	0	0	0	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0039	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0040	2811	1	0	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0041	2811	1	0	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0042	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0043	2811	1	0	0	0	1	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0044	2743	1	0	0	0	0	1	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0045	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0046	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0047	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0048	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0049	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0050	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0051	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0052	2811	1	0	0	1	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0053	2811	1	1	0	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0054	2811	1	0	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN1_chr3_190300707_190327446	0/0	t0055	2811	1	0	1	0	0	0	copy fasta	CLDN1	chr3	190300707	190327446
CLDN20_chr6_155259013_155281548	0/0	t0001	550	161	26	30	84	2	19	copy fasta	CLDN20	chr6	155259013	155281548