JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN20_chr6_155259013_155281548	0/0	t0002	550	112	15	15	71	2	9	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	t0003	550	54	33	8	4	2	7	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	1/1	t0004	550	30	2	14	1	7	4	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	t0005	550	15	7	7	0	1	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	t0006	550	8	8	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	t0007	550	3	3	0	0	0	0	copy fasta	CLDN20	chr6	155259013	155281548
CLDN20_chr6_155259013_155281548	0/0	t0008	550	1	0	0	0	0	1	copy fasta	CLDN20	chr6	155259013	155281548
CLDN22_chr4_183313100_183325276	0/1	t0001	1516	261	45	50	123	12	30	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0002	1515	138	24	21	77	5	11	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	1/0	t0003	1515	13	11	1	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0004	1517	6	0	5	0	0	1	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0005	1516	5	5	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0006	1515	4	4	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0007	1516	3	2	1	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0008	1516	3	0	2	0	1	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0009	1515	2	2	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0010	1515	2	2	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0011	1515	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0012	1516	1	0	1	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0013	1516	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0014	1516	1	1	0	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0015	1516	1	0	0	1	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0016	1515	1	0	0	1	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0017	1516	1	0	1	0	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0018	1516	1	0	0	1	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN22_chr4_183313100_183325276	0/0	t0019	1516	1	0	0	1	0	0	copy fasta	CLDN22	chr4	183313100	183325276
CLDN23_chr8_8696937_8709096	1/0	t0001	1282	176	38	29	88	4	16	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0002	1283	114	8	16	72	2	16	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/1	t0003	1282	74	18	23	11	7	14	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0004	1283	28	0	3	25	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0005	1282	13	13	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0006	1282	12	12	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0007	1282	5	0	3	0	2	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0008	1282	2	0	0	2	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0009	1282	2	2	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0010	1282	1	0	0	1	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0011	1314	1	0	1	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0012	1282	1	0	1	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0013	1282	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0014	1282	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0015	1282	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0016	1282	1	0	0	0	1	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0017	1282	1	0	1	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0018	1283	1	0	1	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0019	1283	1	0	0	1	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0020	1283	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN23_chr8_8696937_8709096	0/0	t0021	1282	1	1	0	0	0	0	copy fasta	CLDN23	chr8	8696937	8709096
CLDN2_chrX_106915402_106935861	1/1	t0001	2269	201	40	42	87	9	21	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0002	2269	13	12	1	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0003	2269	9	9	0	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861