JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN2_chrX_106915402_106935861	0/0	t0004	2269	8	8	0	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0005	2269	6	0	0	6	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0006	2269	2	0	2	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0007	2270	2	0	0	2	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0008	2269	2	0	1	0	0	1	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0009	2270	2	0	2	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0010	2269	1	0	0	0	0	1	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0011	2269	1	0	0	0	0	1	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0012	2269	1	0	0	1	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0013	2269	1	0	0	1	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0014	2269	1	0	0	0	0	1	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0015	2269	1	1	0	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0016	2269	1	0	0	0	0	1	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0017	2269	1	0	1	0	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0018	2269	1	0	0	1	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN2_chrX_106915402_106935861	0/0	t0019	2269	1	0	0	1	0	0	copy fasta	CLDN2	chrX	106915402	106935861
CLDN34_chrX_9962358_9973352	1/1	t0001	351	306	56	57	148	13	30	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	t0002	351	17	14	3	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	t0003	351	2	2	0	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	t0004	351	2	2	0	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	t0005	351	2	2	0	0	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN34_chrX_9962358_9973352	0/0	t0006	350	1	0	0	1	0	0	copy fasta	CLDN34	chrX	9962358	9973352
CLDN3_chr7_73763997_73775270	0/0	t0001	612	216	53	44	88	8	23	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	1/1	t0002	612	184	41	37	80	7	17	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	t0003	612	5	0	2	0	1	2	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	t0004	612	3	0	0	3	0	0	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	t0005	612	1	0	1	0	0	0	copy fasta	CLDN3	chr7	73763997	73775270
CLDN3_chr7_73763997_73775270	0/0	t0006	612	1	0	0	1	0	0	copy fasta	CLDN3	chr7	73763997	73775270
CLDN4_chr7_73825996_73837690	1/0	t0001	1066	172	35	30	80	6	20	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/1	t0002	1066	166	26	40	72	7	20	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0003	1066	15	15	0	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0004	1066	9	9	0	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0005	1066	4	2	2	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0006	1066	2	0	0	2	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0007	1066	2	2	0	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0008	1066	1	1	0	0	0	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN4_chr7_73825996_73837690	0/0	t0009	1066	1	0	0	0	1	0	copy fasta	CLDN4	chr7	73825996	73837690
CLDN5_chr22_19518027_19529410	0/1	t0001	728	158	19	32	74	9	23	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	1/0	t0002	728	115	49	22	36	5	2	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0003	728	95	16	7	69	0	3	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0004	728	43	7	9	23	0	4	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0005	728	13	0	2	2	0	9	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0006	728	10	4	5	0	0	1	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0007	728	4	0	0	4	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0008	728	2	0	1	1	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0009	728	1	1	0	0	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN5_chr22_19518027_19529410	0/0	t0010	728	1	0	0	1	0	0	copy fasta	CLDN5	chr22	19518027	19529410
CLDN6_chr16_3009712_3023183	1/1	t0001	704	304	68	69	116	16	33	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0002	704	90	11	14	53	2	10	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0003	705	12	12	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183