Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCY5_chr3_123277296_123454090	1/0	t0001	2858	123	29	16	58	4	15	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0002	2858	65	8	15	27	4	11	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0003	2858	12	1	8	0	0	3	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0004	2858	5	0	0	0	1	4	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0005	2858	5	4	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0006	2858	4	4	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0007	2858	4	3	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0008	2858	4	4	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/1	t0009	2854	3	1	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0010	2858	3	2	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0011	2862	3	3	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0012	2862	2	0	0	2	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0013	2862	2	0	0	2	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0014	2858	2	2	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0015	2859	2	2	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0016	2858	2	2	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0017	2855	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0018	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0019	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0020	2859	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0021	2858	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0022	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0023	2854	1	0	0	0	1	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0024	2858	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0025	2858	1	0	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0026	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0027	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0028	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0029	2858	1	0	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0030	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0031	2858	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0032	2858	1	0	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0033	2858	1	0	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0034	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	t0035	2858	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY6_chr12_48761194_48794089	1/1	t0001	2586	248	53	55	95	13	30	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0002	2586	27	17	2	4	1	3	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0003	2593	10	9	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0004	2589	3	0	0	3	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0005	2586	3	0	0	0	0	3	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0006	2586	2	2	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0007	2586	2	0	0	0	0	2	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0008	2586	2	2	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0009	2586	2	0	0	2	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0010	2586	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0011	2586	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0012	2586	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0013	2586	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	t0014	2586	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY7_chr16_50261551_50323135	0/0	t0001	3029	86	27	13	35	2	9	copy fasta	ADCY7	chr16	50261551	50323135