JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDN6_chr16_3009712_3023183	0/0	t0004	704	6	0	1	5	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0005	704	4	0	0	1	0	3	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0006	704	2	2	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0007	704	2	2	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0008	704	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0009	704	1	0	0	1	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0010	704	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN6_chr16_3009712_3023183	0/0	t0011	704	1	1	0	0	0	0	copy fasta	CLDN6	chr16	3009712	3023183
CLDN7_chr17_7254903_7267478	0/0	t0001	906	179	62	25	68	9	15	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	1/1	t0002	907	175	26	38	95	5	9	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0003	906	48	0	13	19	4	12	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0004	907	7	0	0	7	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0005	904	3	0	1	2	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0006	906	1	1	0	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0007	906	1	0	0	0	0	1	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0008	907	1	0	0	1	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0009	906	1	0	0	0	0	1	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0010	906	1	0	1	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN7_chr17_7254903_7267478	0/0	t0011	906	1	1	0	0	0	0	copy fasta	CLDN7	chr17	7254903	7267478
CLDN8_chr21_30209006_30221097	1/1	t0001	1415	289	43	70	120	16	38	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0002	1415	129	24	10	87	2	6	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0003	1414	15	13	2	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0004	1415	7	7	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0005	1415	6	0	0	6	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0006	1415	6	6	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0007	1416	4	0	0	4	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0008	1414	3	3	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0009	1415	1	0	1	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0010	1414	1	1	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0011	1415	1	0	0	1	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0012	1415	1	0	0	1	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0013	1415	1	1	0	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0014	1415	1	0	0	1	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN8_chr21_30209006_30221097	0/0	t0015	1415	1	0	1	0	0	0	copy fasta	CLDN8	chr21	30209006	30221097
CLDN9_chr16_3007923_3019505	1/1	t0001	930	233	43	50	93	14	31	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0002	930	119	2	15	87	2	13	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0003	930	38	21	11	4	0	2	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0004	930	26	24	2	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0005	930	5	5	0	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0006	930	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0007	930	1	0	1	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0008	930	1	1	0	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0009	930	1	1	0	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0010	930	1	0	1	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0011	930	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	t0012	930	1	1	0	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDND1_chr3_98510483_98527902	1/1	t0001	1249	422	87	78	193	16	46	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	t0002	1249	4	0	0	4	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	t0003	1249	2	2	0	0	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	t0004	1249	2	2	0	0	0	0	copy fasta	CLDND1	chr3	98510483	98527902