JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLDND1_chr3_98510483_98527902	0/0	t0005	1249	1	1	0	0	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	t0006	1249	1	0	0	1	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	t0007	1249	1	0	0	1	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	t0008	1249	1	0	0	1	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND2_chr19_51362098_51374003	1/1	t0001	471	393	63	79	190	16	43	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0002	471	14	14	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0003	472	14	11	1	2	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0004	471	6	0	6	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0005	471	4	4	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0006	471	4	4	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0007	471	2	2	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0008	471	1	1	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0009	471	1	1	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	t0010	471	1	0	0	0	0	1	copy fasta	CLDND2	chr19	51362098	51374003
CLEC10A_chr17_7069537_7085251	1/1	t0001	791	303	56	57	144	13	31	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0002	791	36	14	3	19	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0003	791	27	1	9	17	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0004	791	24	0	10	4	1	9	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0005	791	20	12	0	6	0	2	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0006	791	12	0	0	11	1	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0007	791	7	5	0	1	0	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0008	791	3	1	0	0	1	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0009	791	3	0	0	3	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0010	791	3	3	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0011	791	3	0	0	3	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0012	791	3	0	0	3	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0013	791	2	0	0	2	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0014	791	2	2	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0015	791	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0016	791	1	0	0	0	0	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0017	791	1	0	0	0	0	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0018	791	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0019	791	1	0	1	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0020	791	1	0	0	0	0	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0021	791	1	0	0	0	0	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0022	791	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0023	791	1	1	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	t0024	791	1	1	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC11A_chr19_50718364_50730708	1/0	t0001	404	139	18	26	76	2	16	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/1	t0002	404	127	68	24	14	9	11	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	t0003	404	100	12	27	41	5	15	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	t0004	404	6	0	0	6	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	t0005	404	1	0	1	0	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	t0006	404	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC12A_chr12_9966409_9990595	0/0	t0001	758	276	53	38	156	5	24	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	1/0	t0002	758	84	27	20	22	7	7	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/1	t0003	757	68	7	9	36	6	9	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	t0004	758	5	5	0	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	t0005	758	3	3	0	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12A_chr12_9966409_9990595	0/0	t0006	758	3	3	0	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595