JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC12A_chr12_9966409_9990595	0/0	t0007	758	1	0	1	0	0	0	copy fasta	CLEC12A	chr12	9966409	9990595
CLEC12B_chr12_10005627_10023796	1/1	t0001	449	442	91	74	212	18	45	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0002	449	10	0	0	10	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0003	449	5	0	0	5	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0004	449	4	4	0	0	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0005	449	2	0	1	0	0	1	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0006	449	1	1	0	0	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0007	449	1	0	1	0	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC12B_chr12_10005627_10023796	0/0	t0008	449	1	0	0	1	0	0	copy fasta	CLEC12B	chr12	10005627	10023796
CLEC14A_chr14_38249000_38261093	0/1	t0001	622	159	16	35	79	9	19	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	t0002	622	157	23	26	88	4	16	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	1/0	t0003	622	89	45	10	21	1	11	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	t0004	622	5	4	1	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	t0005	622	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	t0006	622	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC16A_chr16_10939564_11187186	1/1	t0001	3651	144	38	35	47	4	18	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0002	3651	39	9	7	18	4	1	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0003	3651	30	6	4	16	2	2	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0004	3651	12	3	4	1	0	4	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0005	3651	4	4	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0006	3651	4	4	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0007	3651	3	3	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0008	3651	3	3	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0009	3651	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0010	3651	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0011	3651	2	2	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0012	3651	2	0	0	0	2	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0013	3651	2	0	0	2	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0014	3651	2	0	1	0	1	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0015	3651	2	0	0	2	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0016	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0017	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0018	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0019	3651	1	0	0	0	0	1	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0020	3651	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0021	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0022	3651	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0023	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0024	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0025	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0026	3651	1	0	0	0	0	1	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0027	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0028	3651	1	0	1	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0029	3651	1	0	0	0	0	1	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0030	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0031	3651	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0032	3651	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0033	3651	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0034	3651	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	t0035	3651	1	0	0	0	1	0	copy fasta	CLEC16A	chr16	10939564	11187186