JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC16A_chr16_10939564_11187186	0/0	t0036	3651	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC17A_chr19_14578084_14617035	0/0	t0001	1916	97	0	26	60	3	8	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/1	t0002	1915	59	13	17	12	6	10	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0003	1917	57	14	9	19	4	11	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0004	1916	53	13	10	27	1	2	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0005	1915	23	22	0	0	1	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0006	1916	19	8	3	5	0	3	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0007	1917	7	0	1	5	0	1	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0008	1916	6	4	1	0	0	1	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0009	1918	6	0	2	3	0	1	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0010	1917	5	3	0	0	2	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0011	1916	4	4	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0012	1918	4	4	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0013	1914	3	1	0	1	1	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0014	1915	3	3	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	1/0	t0015	1917	2	0	0	0	0	1	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0016	1915	2	0	0	2	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0017	1915	2	0	0	2	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0018	1917	2	0	0	2	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0019	1916	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0020	1916	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0021	1915	1	0	1	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0022	1918	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0023	1916	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0024	1916	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0025	1916	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0026	1916	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0027	1917	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	t0028	1917	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC18A_chr16_69946334_69968986	0/0	t0001	409	198	64	26	85	3	20	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	1/0	t0002	409	50	3	22	5	5	14	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0003	409	47	1	20	19	2	5	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0004	409	46	0	5	34	1	6	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0005	409	13	1	0	11	0	1	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0006	409	8	0	1	7	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0007	409	3	3	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0008	409	3	3	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0009	409	3	1	0	2	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0010	409	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0011	409	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0012	409	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0013	409	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0014	409	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0015	409	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	t0016	409	1	0	0	0	1	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18B_chr16_74403631_74426478	0/0	t0001	584	169	35	24	92	0	18	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	1/0	t0002	584	65	14	13	31	2	4	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0003	584	39	5	12	18	1	3	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0004	584	3	1	0	2	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0005	584	3	0	0	2	1	0	copy fasta	CLEC18B	chr16	74403631	74426478