JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC18B_chr16_74403631_74426478	0/0	t0006	584	2	0	0	2	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0007	563	1	0	0	0	0	1	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0008	584	1	0	0	0	0	1	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0009	584	1	0	1	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0010	584	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0011	584	1	0	0	0	0	1	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	t0012	376	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18C_chr16_70168787_70191895	1/0	t0001	647	153	9	42	66	6	29	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0002	647	58	2	15	33	3	5	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0003	647	51	31	8	8	1	3	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0004	647	29	1	0	25	0	3	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0005	647	17	16	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0006	647	15	15	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0007	647	5	5	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0008	647	4	0	4	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0009	647	4	0	1	1	1	1	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0010	647	4	0	3	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0011	647	2	2	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0012	647	2	0	0	2	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0013	647	2	0	1	0	0	1	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0014	647	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0015	647	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0016	647	1	0	0	0	1	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0017	647	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0018	647	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0019	647	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0020	647	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0021	647	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	t0022	647	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC19A_chr16_19280731_19315947	1/0	t0001	1986	121	35	39	25	6	15	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0002	1985	82	2	24	48	3	5	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0003	1986	60	14	4	30	2	10	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0004	1986	58	2	4	45	1	6	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0005	1986	20	1	0	17	0	2	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/1	t0006	1986	19	0	0	17	0	1	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0007	1986	14	13	1	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0008	1986	13	0	0	13	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0009	1985	11	11	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0010	1984	5	5	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0011	1986	3	0	0	0	0	3	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0012	1986	3	3	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0013	1985	3	3	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0014	1986	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0015	1986	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0016	1986	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0017	1986	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0018	1986	1	0	0	0	0	1	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0019	1986	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0020	1985	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0021	1985	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947