JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC19A_chr16_19280731_19315947	0/0	t0022	1985	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0023	1985	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0024	1985	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0025	1985	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0026	1985	1	0	0	0	0	1	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	t0027	1986	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC1A_chr12_10064554_10103985	0/1	t0001	1843	254	68	44	117	9	15	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0002	1843	92	8	16	55	2	11	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0003	1843	15	4	6	0	3	2	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	1/0	t0004	1843	11	9	1	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0005	1843	2	2	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0006	1843	2	1	1	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0007	1843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0008	1843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0009	1843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0010	1843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0011	1843	1	0	0	1	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0012	1843	1	0	0	1	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0013	1843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	t0014	1843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1B_chr12_9988075_10004121	1/1	t0001	90	459	96	71	226	18	46	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	t0002	90	2	0	2	0	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	t0003	90	1	0	1	0	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC20A_chr1_178474240_178501964	1/1	t0001	321	311	95	74	101	12	27	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	t0002	321	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	t0003	321	1	0	0	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	t0004	321	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC2A_chr12_9908227_9937370	1/0	t0001	381	390	93	68	175	11	42	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/1	t0002	381	39	1	1	28	5	3	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	t0003	381	2	0	0	2	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	t0004	381	2	2	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	t0005	381	2	0	1	0	0	1	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	t0006	381	1	0	0	1	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2B_chr12_9847369_9874354	0/0	t0001	1098	183	15	36	102	9	21	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0002	1094	37	12	9	6	3	7	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0003	1126	31	1	8	15	3	4	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0004	1134	27	5	1	17	1	3	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0005	1130	23	2	5	10	1	5	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0006	1138	19	2	0	15	0	2	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0007	1118	16	6	5	5	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0008	1098	15	14	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0009	1122	11	2	3	6	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0010	1142	9	0	0	8	0	1	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0011	1102	6	3	1	0	0	2	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0012	1090	5	3	1	0	0	1	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/1	t0013	1094	4	3	0	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0014	1110	4	4	0	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0015	1182	3	2	0	0	0	1	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0016	1114	3	1	1	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0017	1102	2	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354