JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CLEC2B_chr12_9847369_9874354	0/0	t0018	1098	2	0	0	2	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	1/0	t0019	1084	2	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0020	1170	2	2	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0021	1098	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0022	1098	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0023	1146	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0024	1207	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0025	1212	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0026	1138	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0027	1217	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0028	1213	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0029	1206	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0030	1218	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0031	1222	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0032	1210	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0033	1217	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0034	1213	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0035	1210	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0036	1197	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0037	1201	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0038	1202	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0039	1201	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0040	1196	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0041	1194	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0042	1170	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0043	1181	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0044	1173	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0045	1212	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0046	1184	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0047	1198	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0048	1194	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0049	1190	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0050	1186	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0051	1178	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0052	1184	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0053	1176	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0054	1186	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0055	1188	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0056	1150	1	0	0	1	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0057	1126	1	0	0	0	1	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0058	1170	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0059	1122	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0060	1146	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0061	1138	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0062	1134	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0063	1130	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0064	1126	1	0	1	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0065	1142	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0066	1138	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0067	1130	1	1	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354