JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC2B_chr12_9847369_9874354	0/0	t0068	1126	1	1	0	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0069	1122	1	1	0	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2B_chr12_9847369_9874354	0/0	t0070	1106	1	1	0	0	0	0	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2D_chr12_9664713_9704553	0/0	t0001	4694	110	5	15	74	3	13	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/1	t0002	4701	105	4	15	70	3	12	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0003	4696	31	22	7	0	1	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0004	4708	11	0	7	2	1	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0005	4700	7	3	2	0	1	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0006	4691	6	6	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0007	4698	6	4	2	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0008	4701	6	0	0	6	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0009	4696	6	6	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0010	4701	6	1	5	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0011	4695	5	5	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0012	4693	5	1	3	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0013	4692	4	1	1	0	1	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	1/0	t0014	4702	4	3	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0015	4696	4	4	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0016	4708	4	0	2	0	0	2	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0017	4701	4	0	0	4	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0018	4696	4	1	1	0	0	2	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0019	4694	3	0	0	3	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0020	4693	3	3	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0021	4711	3	2	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0022	4703	3	3	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0023	4701	2	0	2	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0024	4698	2	0	2	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0025	4693	2	2	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0026	4708	2	2	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0027	4702	2	0	0	0	0	2	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0028	4701	2	0	0	0	0	2	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0029	4701	2	0	0	2	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0030	4694	1	0	0	0	1	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0031	4691	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0032	4694	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0033	4667	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0034	4692	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0035	4699	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0036	4694	1	0	0	0	1	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0037	4694	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0038	4694	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0039	4693	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0040	4699	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0041	4696	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0042	4701	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0043	4701	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0044	4711	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0045	4708	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0046	4702	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0047	4701	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553