JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC2D_chr12_9664713_9704553	0/0	t0048	4701	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0049	4702	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0050	4702	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0051	4701	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0052	4701	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0053	4701	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0054	4701	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0055	4701	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0056	4703	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0057	4704	1	0	0	0	0	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0058	4701	1	0	0	1	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0059	4696	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0060	4696	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0061	4696	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0062	4698	1	1	0	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	t0063	4696	1	0	1	0	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2L_chr7_139518685_139549985	1/1	t0001	887	236	40	54	97	8	35	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0002	887	21	18	2	0	0	1	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0003	887	12	12	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0004	887	9	9	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0005	887	8	8	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0006	887	8	5	2	0	0	1	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0007	887	6	1	2	0	2	1	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0008	887	2	1	1	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0009	887	2	0	0	2	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0010	887	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0011	887	1	0	0	1	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0012	887	1	0	1	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	t0013	887	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC3A_chr16_78017548_78037101	0/0	t0001	1340	182	18	34	103	10	17	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/1	t0002	1340	83	3	17	40	5	17	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0003	1340	69	5	14	44	1	5	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	1/0	t0004	1340	60	33	8	13	2	3	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0005	1340	27	23	4	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0006	1340	7	0	0	7	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0007	1340	5	5	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0008	1340	4	4	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0009	1340	2	2	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0010	1340	2	2	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0011	1340	1	1	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0012	1340	1	0	1	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0013	1340	1	0	1	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0014	1340	1	1	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0015	1340	1	0	0	1	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0016	1340	1	1	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	t0017	1340	1	0	1	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3B_chr3_45021303_45041071	0/0	t0001	208	223	53	35	101	6	28	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	1/1	t0002	208	152	41	43	43	10	13	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	0/0	t0003	208	1	0	0	0	0	1	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC4A_chr12_8118617_8143607	0/1	t0001	583	276	12	38	180	9	36	copy fasta	CLEC4A	chr12	8118617	8143607