JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC4A_chr12_8118617_8143607	0/0	t0002	583	84	13	40	21	5	5	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	1/0	t0003	583	26	13	1	2	0	9	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0004	583	15	12	2	1	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0005	583	12	10	1	1	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0006	583	11	7	1	3	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0007	583	6	6	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0008	583	6	5	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0009	583	6	6	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0010	583	4	2	2	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0011	583	3	3	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0012	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0013	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0014	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0015	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0016	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0017	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0018	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0019	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	t0020	583	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4C_chr12_7724383_7752375	1/0	t0001	241	162	24	33	85	5	14	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0002	233	109	28	26	38	6	11	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/1	t0003	233	75	10	5	54	1	4	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0004	249	65	26	7	20	1	11	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0005	241	26	1	8	10	1	6	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0006	241	4	4	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0007	249	3	2	1	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0008	241	2	2	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0009	233	1	0	0	1	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	t0010	225	1	1	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4D_chr12_8508503_8527366	1/1	t0001	1326	246	25	51	132	11	25	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0002	1326	54	17	13	13	2	9	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0003	1325	25	17	4	1	0	3	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0004	1326	12	0	0	12	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0005	1326	12	9	3	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0006	1326	11	0	0	7	0	4	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0007	1327	9	8	0	1	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0008	1326	7	6	1	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0009	1326	4	4	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0010	1326	3	0	2	0	1	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0011	1326	3	0	0	3	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0012	1326	3	3	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0013	1326	2	2	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0014	1326	2	0	0	0	2	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0015	1326	2	1	0	1	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0016	1326	1	0	0	1	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0017	1326	1	0	0	1	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0018	1325	1	1	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0019	1327	1	1	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0020	1326	1	0	0	0	0	1	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	t0021	1326	1	1	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366