JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC4D_chr12_8508503_8527366	0/0	t0022	1326	1	1	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4E_chr12_8528305_8545905	1/0	t0001	1442	138	13	28	82	3	11	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/1	t0002	1446	132	15	13	85	3	15	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0003	1446	85	29	17	19	6	14	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0004	1442	61	28	14	12	4	3	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0005	1442	7	6	1	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0006	1446	5	0	5	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0007	1446	3	3	0	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0008	1442	2	1	1	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0009	1442	2	2	0	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0010	1446	2	0	0	0	0	2	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0011	1442	1	0	0	0	0	1	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0012	1442	1	1	0	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0013	1446	1	0	1	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0014	1446	1	0	0	1	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	t0015	1446	1	0	0	1	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4F_chr2_70803643_70825599	1/1	t0001	705	285	63	50	138	9	23	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0002	704	53	6	16	12	7	12	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0003	705	51	9	5	35	0	2	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0004	705	13	12	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0005	705	4	0	2	0	0	2	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0006	705	2	0	0	2	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0007	705	2	2	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0008	705	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0009	695	1	0	0	1	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0010	705	1	0	0	0	0	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	t0011	705	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4G_chr19_7723957_7737110	1/1	t0001	418	414	93	74	183	14	48	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	t0002	418	11	0	0	11	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	t0003	418	3	3	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	t0004	418	2	2	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	t0005	418	1	1	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	t0006	418	1	1	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4M_chr19_7758243_7774605	1/1	t0001	642	304	51	63	140	12	36	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0002	642	57	17	3	37	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0003	642	51	1	4	39	4	3	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0004	639	16	16	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0005	642	13	1	8	0	0	4	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0006	642	8	7	1	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0007	642	2	2	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0008	642	2	0	0	2	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0009	642	2	2	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0010	642	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0011	642	1	0	1	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0012	642	1	0	0	0	0	1	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0013	642	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	t0014	642	1	1	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC5A_chr7_141922357_141951974	0/0	t0001	2936	110	36	28	28	8	10	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/1	t0002	2936	93	2	26	51	2	11	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	1/0	t0003	2936	62	7	12	33	4	5	copy fasta	CLEC5A	chr7	141922357	141951974