JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC5A_chr7_141922357_141951974	0/0	t0004	2935	18	3	0	8	0	7	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0005	2935	15	0	5	10	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0006	2936	12	10	1	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0007	2936	9	9	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0008	2936	9	0	0	8	0	1	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0009	2936	7	0	0	7	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0010	2936	6	0	0	6	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0011	2935	5	4	1	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0012	2936	5	0	1	0	2	2	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0013	2935	4	4	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0014	2936	4	0	0	0	0	4	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0015	2936	3	0	0	2	0	1	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0016	2935	3	2	1	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0017	2936	3	0	0	3	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0018	2936	2	0	0	2	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0019	2936	2	0	0	2	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0020	2936	2	2	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0021	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0022	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0023	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0024	2936	1	0	1	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0025	2936	1	1	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0026	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0027	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0028	2935	1	1	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0029	2936	1	1	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0030	2935	1	0	0	0	0	1	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0031	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	t0032	2936	1	0	0	1	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC6A_chr12_8450962_8483330	0/1	t0001	1017	255	46	51	120	9	28	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0002	1017	53	24	15	4	3	7	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0003	1017	8	8	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	1/0	t0004	1017	5	4	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0005	1017	4	4	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0006	1017	2	2	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0007	1017	2	2	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0008	1017	2	0	0	2	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0009	1017	1	0	0	0	0	1	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0010	1017	1	1	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	t0011	1017	1	1	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC7A_chr12_10111777_10135199	1/0	t0001	1799	148	19	23	92	0	13	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/1	t0002	1799	107	15	36	20	14	21	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0003	1799	32	0	1	29	0	2	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0004	1803	28	0	0	28	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0005	1803	17	11	6	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0006	1799	16	0	0	16	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0007	1803	14	8	0	5	0	1	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0008	1803	13	12	1	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0009	1799	8	0	0	8	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0010	1800	7	7	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199