JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLEC7A_chr12_10111777_10135199	0/0	t0011	1803	6	0	3	1	0	2	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0012	1799	6	5	1	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0013	1804	5	5	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0014	1798	5	0	0	5	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0015	1795	5	0	4	0	1	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0016	1799	4	4	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0017	1799	4	0	0	4	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0018	1798	4	2	2	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0019	1799	3	0	0	0	0	3	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0020	1799	2	2	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0021	1798	2	0	0	2	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0022	1799	2	2	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0023	1804	2	0	0	2	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0024	1798	1	1	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0025	1799	1	0	0	1	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0026	1799	1	1	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0027	1799	1	0	1	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0028	1798	1	0	0	1	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0029	1798	1	0	0	0	0	1	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0030	1803	1	0	0	1	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0031	1803	1	0	0	0	0	1	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0032	1804	1	0	0	1	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	t0033	1794	1	0	0	0	1	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC9A_chr12_10025682_10071031	1/1	t0001	1008	394	84	66	194	10	38	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	t0002	1008	6	6	0	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	t0003	1008	2	2	0	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	t0004	1008	1	0	0	1	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	t0005	1008	1	1	0	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	t0006	1008	1	1	0	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	t0007	1008	1	0	0	1	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLGN_chr4_140383453_140432648	1/0	t0001	893	272	73	56	98	9	35	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	t0002	893	64	3	15	41	3	2	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/1	t0003	893	9	7	1	0	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	t0004	893	6	6	0	0	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	t0005	893	3	0	0	0	0	3	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	t0006	893	2	0	0	2	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	t0007	893	1	1	0	0	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	t0008	893	1	0	0	1	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLHC1_chr2_55167547_55237293	0/0	t0001	3568	102	4	15	70	4	9	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0002	3569	72	6	10	47	1	8	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0003	3569	43	6	4	29	3	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0004	3568	36	25	5	0	2	4	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0005	3567	32	28	2	1	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0006	3567	30	1	17	4	1	7	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0007	3568	21	5	3	10	2	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	1/0	t0008	3570	13	0	2	3	3	4	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0009	3570	9	0	0	9	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0010	3569	5	0	0	5	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0011	3568	5	1	3	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0012	3565	3	3	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293