JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLHC1_chr2_55167547_55237293	0/0	t0013	3569	3	0	0	3	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0014	3568	3	0	2	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0015	3567	2	0	0	2	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0016	3567	2	0	2	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0017	3569	2	2	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0018	3569	2	2	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0019	3567	2	0	1	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/1	t0020	3568	2	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0021	3569	2	0	0	2	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0022	3570	2	0	0	1	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0023	3568	1	0	0	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0024	3568	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0025	3569	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0026	3568	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0027	3569	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0028	3565	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0029	3567	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0030	3568	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0031	3569	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0032	3569	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	t0033	3567	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLIC1_chr6_31725599_31741530	0/1	t0001	474	375	85	75	156	16	42	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	t0002	474	11	0	0	11	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	t0003	474	7	2	3	0	2	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	t0004	474	1	1	0	0	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	t0005	474	1	0	0	1	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC2_chrX_155271211_155339614	0/1	t0001	1880	146	23	26	74	5	17	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	1/0	t0002	1880	73	21	14	26	4	7	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0003	1880	17	12	4	0	0	1	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0004	1876	6	5	1	0	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0005	1880	4	4	0	0	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0006	1880	3	3	0	0	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0007	1880	3	3	0	0	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0008	1880	2	0	2	0	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0009	1880	1	0	0	1	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0010	1880	1	1	0	0	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0011	1885	1	0	0	1	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	t0012	1879	1	0	0	1	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC3_chr9_136989608_137001568	1/1	t0001	99	398	88	76	176	14	42	copy fasta	CLIC3	chr9	136989608	137001568
CLIC4_chr1_24740447_24849321	0/1	t0001	3492	155	19	39	76	7	13	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0002	3492	101	36	14	34	7	10	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0003	3492	29	0	2	26	0	1	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	1/0	t0004	3492	20	14	5	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0005	3492	6	5	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0006	3492	6	0	0	6	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0007	3492	4	3	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0008	3492	4	0	0	4	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0009	3492	3	3	0	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0010	3492	3	2	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0011	3492	2	0	0	0	0	2	copy fasta	CLIC4	chr1	24740447	24849321