JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLIC4_chr1_24740447_24849321	0/0	t0012	3492	2	0	1	1	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0013	3492	1	0	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0014	3492	1	1	0	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0015	3492	1	0	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0016	3492	1	0	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0017	3492	1	1	0	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0018	3492	1	0	1	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0019	3492	1	0	0	1	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0020	3492	1	1	0	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	t0021	3492	1	1	0	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC5_chr6_45893456_46020860	1/0	t0001	4951	105	21	27	42	10	4	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/1	t0002	4960	103	13	17	57	3	12	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0003	4964	42	10	6	23	0	3	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0004	4951	8	0	3	0	0	5	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0005	4959	7	0	0	7	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0006	4951	6	0	0	6	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0007	4959	5	5	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0008	4964	5	5	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0009	4960	4	3	0	0	1	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0010	4951	4	0	2	1	0	1	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0011	4961	3	2	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0012	4964	3	0	3	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0013	4964	3	3	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0014	4963	3	1	0	2	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0015	4961	2	2	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0016	4964	2	2	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0017	4964	2	0	2	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0018	4960	2	2	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0019	4962	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0020	4951	1	0	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0021	4951	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0022	4951	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0023	4951	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0024	4961	1	0	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0025	4951	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0026	4951	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0027	4951	1	0	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0028	4951	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0029	4960	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0030	4960	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0031	4951	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0032	4951	1	0	0	0	0	1	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0033	4951	1	0	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0034	4960	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0035	4960	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0036	4960	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0037	4960	1	0	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0038	4960	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0039	4960	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0040	4963	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860