JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLIC5_chr6_45893456_46020860	0/0	t0041	4964	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0042	4962	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0043	4965	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0044	4965	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0045	4960	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0046	4960	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0047	4964	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0048	4963	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	t0049	4964	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC6_chr21_34663994_34723223	0/1	t0001	2133	42	0	3	35	0	3	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	1/0	t0002	2137	39	3	9	20	2	4	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0003	2137	20	0	6	7	1	6	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0004	2135	18	0	2	14	0	2	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0005	2149	13	7	3	1	1	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0006	2145	12	2	3	1	1	5	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0007	2147	12	3	4	2	2	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0008	2141	11	8	1	0	0	2	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0009	2133	10	0	6	4	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0010	2133	7	0	0	5	1	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0011	2145	7	5	2	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0012	2133	5	1	2	0	2	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0013	2133	5	4	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0014	2141	5	1	2	2	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0015	2143	4	0	3	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0016	2143	4	0	1	0	3	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0017	2151	4	4	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0018	2139	3	0	1	2	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0019	2131	3	3	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0020	2135	3	0	0	3	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0021	2139	3	3	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0022	2135	2	0	0	0	0	2	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0023	2147	2	0	2	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0024	2149	2	0	2	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0025	2137	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0026	2137	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0027	2143	2	1	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0028	2149	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0029	2157	2	1	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0030	2159	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0031	2135	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0032	2135	2	0	0	2	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0033	2143	2	0	0	2	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0034	2137	2	0	2	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0035	2135	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0036	2147	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0037	2137	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0038	2133	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0039	2135	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0040	2141	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0041	2153	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223