JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLIC6_chr21_34663994_34723223	0/0	t0042	2133	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0043	2135	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0044	2133	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0045	2135	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0046	2141	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0047	2147	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0048	2155	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0049	2151	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0050	2159	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0051	2151	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0052	2161	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0053	2165	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0054	2287	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0055	2171	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0056	2291	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0057	2293	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0058	2161	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0059	2177	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0060	2131	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0061	2135	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0062	2135	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0063	2137	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0064	2139	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0065	2137	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0066	2139	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0067	2137	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0068	2137	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0069	2133	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0070	2133	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0071	2151	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0072	2147	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0073	2147	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0074	2149	1	0	0	0	1	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0075	2147	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0076	2153	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0077	2159	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0078	2151	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0079	2155	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0080	2157	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0081	2161	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0082	2157	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0083	2163	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0084	2133	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0085	2135	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0086	2135	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0087	2135	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0088	2133	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	t0089	2133	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLINT1_chr5_157780747_157864145	1/1	t0001	2075	125	33	33	35	7	15	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0002	2075	105	10	19	60	7	9	copy fasta	CLINT1	chr5	157780747	157864145