JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLINT1_chr5_157780747_157864145	0/0	t0003	2075	67	35	2	25	0	5	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0004	2075	28	7	5	13	2	1	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0005	2073	6	0	0	6	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0006	2075	2	0	0	2	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0007	2075	2	2	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0008	2075	1	0	0	1	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0009	2075	1	1	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0010	2075	1	1	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0011	2075	1	0	1	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	t0012	2075	1	1	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLIP1_chr12_122266469_122427669	1/1	t0001	1662	67	8	14	27	5	11	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0002	1662	54	0	9	28	5	12	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0003	1662	23	6	9	5	2	1	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0004	1662	15	15	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0005	1662	14	4	3	1	0	6	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0006	1662	11	9	2	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0007	1662	10	10	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0008	1662	7	0	0	7	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0009	1661	6	6	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0010	1662	4	4	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0011	1662	3	1	0	0	0	2	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0012	1662	2	2	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0013	1662	2	2	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0014	1662	2	2	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0015	1662	2	0	0	0	2	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0016	1662	2	2	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0017	1662	2	2	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0018	1661	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0019	1662	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0020	1662	1	0	0	1	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0021	1662	1	0	0	1	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0022	1662	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0023	1661	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0024	1662	1	0	1	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	t0025	1662	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP2_chr7_74284407_74410935	0/0	t0001	2483	154	54	30	55	1	14	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	1/1	t0002	2483	64	10	16	26	3	7	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0003	2483	12	3	1	1	0	7	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0004	2483	9	0	3	3	0	3	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0005	2483	8	1	2	0	1	4	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0006	2483	5	3	2	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0007	2483	5	5	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0008	2481	4	4	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0009	2483	3	2	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0010	2483	3	3	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0011	2483	2	0	2	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0012	2483	2	0	0	0	0	2	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0013	2483	1	1	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0014	2483	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0015	2483	1	0	0	0	1	0	copy fasta	CLIP2	chr7	74284407	74410935