JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLIP2_chr7_74284407_74410935	0/0	t0016	2483	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0017	2483	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0018	2483	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	t0019	2483	1	0	0	0	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP3_chr19_36009660_36037873	1/1	t0001	1707	221	45	41	96	12	25	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0002	1707	54	2	16	29	0	7	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0003	1707	43	30	7	0	2	4	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0004	1707	38	1	1	32	0	4	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0005	1707	23	10	5	6	0	2	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0006	1707	20	2	3	10	1	4	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0007	1707	7	0	6	0	1	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0008	1707	2	1	1	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0009	1707	2	2	0	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0010	1707	2	0	0	0	0	2	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0011	1707	1	1	0	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0012	1707	1	0	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0013	1717	1	0	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	t0014	1707	1	0	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP4_chr2_29110415_29188808	1/1	t0001	2182	224	43	42	94	14	29	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0002	2182	17	15	2	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0003	2182	15	7	8	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0004	2182	8	8	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0005	2182	7	7	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0006	2182	4	0	4	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0007	2182	3	3	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0008	2182	2	1	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0009	2182	2	2	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0010	2182	2	1	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0011	2182	2	0	0	2	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0012	2182	1	0	0	1	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0013	2182	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0014	2182	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0015	2182	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0016	2182	1	0	0	1	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	t0017	2182	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLK1_chr2_200848009_200869658	1/0	t0001	393	395	81	71	184	16	42	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/1	t0002	393	9	1	1	0	2	4	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	t0003	393	8	8	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	t0004	393	5	5	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	t0005	393	1	1	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK2_chr1_155257868_155278504	0/1	t0001	655	327	90	44	134	14	44	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	t0002	655	2	0	0	2	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	t0003	655	1	0	0	1	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	t0004	655	1	0	0	1	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK3_chr15_74610836_74635201	1/1	t0001	382	353	80	56	169	14	32	copy fasta	CLK3	chr15	74610836	74635201
CLK3_chr15_74610836_74635201	0/0	t0002	382	1	0	0	1	0	0	copy fasta	CLK3	chr15	74610836	74635201
CLK4_chr5_178597664_178632050	1/1	t0001	1059	374	97	64	161	12	38	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	t0002	1059	4	0	4	0	0	0	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	t0003	1059	3	0	0	2	0	1	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	t0004	1059	1	1	0	0	0	0	copy fasta	CLK4	chr5	178597664	178632050