JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLK4_chr5_178597664_178632050	0/0	t0005	1059	1	0	0	1	0	0	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	t0006	1059	1	0	0	0	0	1	copy fasta	CLK4	chr5	178597664	178632050
CLMN_chr14_95176940_95324908	1/0	t0001	9741	82	9	28	24	3	17	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0002	9743	22	1	2	16	1	2	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0003	9741	16	2	5	4	0	5	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0004	9741	15	0	4	11	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0005	9742	14	11	3	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0006	9743	10	0	4	3	2	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0007	9743	9	3	2	0	3	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0008	9743	9	9	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0009	9741	8	8	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0010	9743	5	5	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0011	9741	5	0	0	5	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0012	9741	4	4	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0013	9743	4	0	1	1	1	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0014	9744	4	2	0	2	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0015	9741	3	2	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/1	t0016	9741	3	0	1	0	1	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0017	9742	3	0	0	3	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0018	9742	2	2	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0019	9742	2	1	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0020	9741	2	2	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0021	9741	2	1	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0022	9741	2	2	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0023	9743	2	0	0	2	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0024	9743	2	0	2	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0025	9742	2	2	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0026	9742	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0027	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0028	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0029	9743	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0030	9743	1	0	0	0	1	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0031	9743	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0032	9743	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0033	9743	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0034	9743	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0035	9743	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0036	9743	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0037	9741	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0038	9742	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0039	9742	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0040	9741	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0041	9741	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0042	9741	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0043	9741	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0044	9741	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0045	9741	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0046	9741	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0047	9741	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0048	9741	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908