JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLMN_chr14_95176940_95324908	0/0	t0049	9741	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0050	9741	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0051	9741	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0052	9741	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0053	9741	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0054	9741	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0055	9742	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0056	9741	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0057	9741	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0058	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0059	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0060	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0061	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0062	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0063	9742	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0064	9742	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0065	9742	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0066	9743	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0067	9743	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0068	9743	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	t0069	9743	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMP_chr11_123064872_123200248	0/0	t0001	3911	50	2	19	14	5	10	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0002	3911	34	19	8	1	1	5	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0003	3911	30	4	6	11	3	6	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0004	3912	18	4	6	6	1	1	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0005	3911	9	0	3	5	0	1	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0006	3911	9	2	0	7	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0007	3912	8	4	0	2	1	1	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0008	3912	7	7	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0009	3906	6	0	1	3	0	2	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0010	3911	6	6	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0011	3911	5	0	0	5	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0012	3911	5	1	0	4	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0013	3913	4	4	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0014	3912	4	3	0	0	0	1	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0015	3906	3	0	0	3	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0016	3911	3	0	2	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0017	3912	3	3	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0018	3906	3	0	0	3	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0019	3912	3	3	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0020	3912	3	3	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0021	3911	3	3	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0022	3911	2	2	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0023	3912	2	0	1	0	1	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0024	3912	2	1	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0025	3906	2	0	2	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0026	3912	2	0	1	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0027	3911	2	2	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0028	3913	2	1	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/1	t0029	3911	2	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248