JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLMP_chr11_123064872_123200248	0/0	t0030	3911	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0031	3913	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0032	3911	1	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0033	3911	1	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0034	3911	1	0	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0035	3912	1	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0036	3913	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0037	3906	1	0	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0038	3905	1	0	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0039	3911	1	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0040	3912	1	0	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0041	3911	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0042	3911	1	0	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0043	3913	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0044	3906	1	0	0	0	0	1	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0045	3911	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0046	3911	1	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0047	3911	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0048	3911	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0049	3912	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	t0050	3911	1	1	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	1/0	t0051	3911	1	0	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLN3_chr16_28472279_28497074	1/1	t0001	369	344	77	60	154	9	42	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0002	369	5	5	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0003	369	4	4	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0004	369	3	3	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0005	369	1	0	0	1	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0006	369	1	1	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0007	369	1	0	0	0	1	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	t0008	369	1	0	0	1	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN5_chr13_76987081_77010117	1/1	t0001	4167	231	21	48	117	10	33	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0002	4165	42	1	7	30	1	3	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0003	4164	29	0	2	27	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0004	4167	24	13	2	9	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0005	4167	16	15	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0006	4167	16	11	5	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0007	4167	8	8	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0008	4165	7	5	2	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0009	4167	6	6	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0010	4166	5	1	1	1	2	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0011	4167	4	0	0	4	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0012	4167	3	3	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0013	4164	3	0	0	3	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0014	4163	3	0	0	3	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0015	4167	3	3	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0016	4167	2	0	0	2	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0017	4163	2	0	0	1	1	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0018	4167	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0019	4167	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	t0020	4167	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117