JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLNK_chr4_10481395_10689768	0/0	t0039	4226	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0040	4224	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0041	4229	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0042	4224	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0043	4220	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0044	4224	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0045	4219	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0046	4219	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0047	4223	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0048	4223	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0049	4210	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0050	4231	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0051	4230	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0052	4229	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0053	4229	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0054	4216	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0055	4221	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0056	4230	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0057	4226	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0058	4225	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0059	4224	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0060	4224	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0061	4224	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0062	4224	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0063	4220	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0064	4224	1	0	0	0	1	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0065	4223	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0066	4219	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0067	4225	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0068	4224	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0069	4229	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0070	4232	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0071	4230	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0072	4230	1	0	1	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0073	4230	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0074	4230	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0075	4221	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0076	4221	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0077	4228	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0078	4225	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0079	4230	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	t0080	4230	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNS1A_chr11_77609530_77642794	1/1	t0001	2269	293	49	49	141	13	39	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0002	2268	63	20	11	31	1	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0003	2268	10	0	1	9	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0004	2269	5	1	3	0	0	1	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0005	2269	5	4	1	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0006	2269	4	0	2	0	2	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0007	2269	3	3	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0008	2269	3	0	3	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794