JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLNS1A_chr11_77609530_77642794	0/0	t0009	2269	3	3	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0010	2268	2	2	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0011	2269	2	2	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0012	2269	2	0	2	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0013	2268	2	2	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0014	2269	1	0	0	1	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0015	2269	1	0	1	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0016	2269	1	0	0	1	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0017	2269	1	1	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0018	2269	1	1	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0019	2269	1	1	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0020	2268	1	0	1	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0021	2268	1	0	0	1	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0022	2268	1	0	0	1	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0023	2268	1	1	0	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	t0024	2269	1	0	0	1	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLOCK_chr4_55422903_55551909	0/0	t0001	7931	59	4	13	36	2	4	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0002	7930	53	5	10	32	0	6	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0003	7927	21	0	2	17	1	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	1/1	t0004	7930	19	9	6	0	2	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0005	7929	13	12	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0006	7927	11	0	1	5	1	4	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0007	7931	8	4	2	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0008	7930	7	1	1	4	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0009	7928	6	1	4	0	1	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0010	7930	6	5	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0011	7934	5	5	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0012	7929	5	0	1	2	0	2	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0013	7930	5	0	0	5	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0014	7929	5	0	3	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0015	7932	4	0	1	0	0	3	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0016	7927	4	0	0	4	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0017	7928	4	4	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0018	7931	4	4	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0019	7930	4	0	0	4	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0020	7929	4	4	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0021	7932	4	0	0	3	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0022	7930	3	0	3	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0023	7927	3	0	0	3	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0024	7930	3	3	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0025	7930	3	1	1	0	1	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0026	7931	3	0	1	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0027	7930	3	3	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0028	7928	3	3	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0029	7928	3	3	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0030	7932	3	0	0	2	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0031	7928	2	0	0	0	0	2	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0032	7928	2	0	0	0	0	2	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0033	7928	2	0	0	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0034	7927	2	0	1	0	1	0	copy fasta	CLOCK	chr4	55422903	55551909