JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLOCK_chr4_55422903_55551909	0/0	t0035	7931	2	2	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0036	7931	2	2	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0037	7929	2	2	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0038	7933	2	0	0	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0039	7932	2	2	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0040	7933	2	0	1	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0041	7927	1	0	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0042	7933	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0043	7931	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0044	7930	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0045	7927	1	0	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0046	7927	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0047	7926	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0048	7927	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0049	7931	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0050	7932	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0051	7929	1	0	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0052	7928	1	0	0	0	1	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0053	7934	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0054	7933	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0055	7930	1	0	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0056	7930	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0057	7930	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0058	7927	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0059	7932	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0060	7931	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0061	7930	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0062	7928	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0063	7930	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0064	7932	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0065	7930	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0066	7931	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0067	7931	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0068	7929	1	0	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0069	7931	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0070	7929	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0071	7930	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0072	7929	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0073	7929	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0074	7930	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0075	7931	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0076	7931	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0077	7932	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0078	7931	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0079	7931	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	t0080	7929	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLP1_chr11_57652762_57666865	1/1	t0001	551	326	94	62	108	16	44	copy fasta	CLP1	chr11	57652762	57666865
CLP1_chr11_57652762_57666865	0/0	t0002	551	6	0	6	0	0	0	copy fasta	CLP1	chr11	57652762	57666865
CLPB_chr11_72280495_72439531	0/0	t0001	7934	10	0	3	6	1	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0002	7944	8	2	0	3	1	2	copy fasta	CLPB	chr11	72280495	72439531