JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLPB_chr11_72280495_72439531	0/0	t0053	7930	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0054	7930	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0055	7931	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0056	7918	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0057	7936	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0058	7938	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0059	7937	1	0	0	0	1	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0060	7937	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0061	7936	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0062	7931	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0063	7950	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0064	7932	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0065	7919	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0066	7939	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0067	7937	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0068	7937	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0069	7924	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/1	t0070	7922	1	0	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0071	7938	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0072	7935	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0073	7930	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0074	7933	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0075	7924	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0076	7945	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0077	7959	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0078	7945	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0079	7953	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0080	7935	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0081	7934	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0082	7947	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0083	7954	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0084	7951	1	0	0	0	0	1	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0085	7950	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0086	7949	1	0	0	0	0	1	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0087	7947	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0088	7942	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0089	7942	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0090	7946	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0091	7956	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0092	7946	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0093	7944	1	0	0	0	1	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0094	7943	1	0	0	0	0	1	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0095	7925	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0096	7924	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0097	7923	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0098	7930	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0099	7925	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0100	7948	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0101	7945	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0102	7925	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531