JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLPB_chr11_72280495_72439531	0/0	t0103	7926	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0104	7924	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0105	7925	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0106	7924	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0107	7949	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0108	7950	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0109	7948	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0110	7946	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0111	7945	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0112	7945	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0113	7932	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0114	7926	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0115	7949	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0116	7947	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0117	7932	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0118	7926	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0119	7946	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0120	7932	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0121	7927	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0122	7947	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0123	7947	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0124	7932	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0125	7929	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0126	7949	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0127	7941	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0128	7944	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0129	7944	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0130	7929	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	t0131	7929	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPP_chr19_6356531_6375242	1/1	t0001	1577	170	8	47	75	14	24	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0002	1576	108	17	14	65	0	12	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0003	1576	16	15	1	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0004	1576	15	12	3	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0005	1576	15	14	1	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0006	1577	9	9	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0007	1577	7	0	0	6	0	1	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0008	1578	7	2	1	4	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0009	1575	3	3	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0010	1577	3	0	3	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0011	1578	3	3	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0012	1578	2	0	2	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0013	1576	2	0	0	2	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0014	1577	2	0	0	2	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0015	1576	2	2	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0016	1576	2	2	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0017	1577	2	0	1	0	0	1	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0018	1577	1	0	1	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0019	1577	1	0	0	1	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0020	1576	1	0	0	1	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0021	1576	1	0	0	1	0	0	copy fasta	CLPP	chr19	6356531	6375242