JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLPP_chr19_6356531_6375242	0/0	t0022	1577	1	1	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0023	1578	1	1	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0024	1577	1	0	0	1	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0025	1577	1	0	0	1	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0026	1577	1	0	0	1	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0027	1576	1	1	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0028	1577	1	1	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	t0029	1577	1	1	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPSL1_chr6_35776019_35793150	1/1	t0001	233	435	86	79	204	16	48	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	t0002	230	9	8	1	0	0	0	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL2_chr6_35771598_35784552	1/1	t0001	124	460	96	82	212	18	50	copy fasta	CLPSL2	chr6	35771598	35784552
CLPS_chr6_35789982_35802323	1/1	t0001	200	380	78	66	182	15	37	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	t0002	200	35	15	14	0	1	5	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	t0003	200	1	0	0	1	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	t0004	24646	1	1	0	0	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	t0005	200	1	0	0	1	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPTM1L_chr5_1312752_1350099	0/0	t0001	876	308	70	61	139	5	33	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	1/1	t0002	876	44	17	15	3	5	2	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0003	861	5	4	1	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0004	876	4	0	1	0	0	3	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0005	876	2	0	0	0	0	2	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0006	894	2	2	0	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0007	876	1	0	0	0	0	1	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0008	876	1	0	0	0	0	1	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0009	876	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0010	876	1	1	0	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	t0011	876	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1_chr19_44950380_44998341	0/1	t0001	461	303	76	50	138	10	28	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	1/0	t0002	461	50	7	15	15	2	10	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0003	461	6	0	5	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0004	461	4	2	2	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0005	461	3	0	0	3	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0006	461	3	2	1	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0007	461	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0008	461	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0009	461	1	0	1	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0010	461	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	t0011	461	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPX_chr15_65143219_65190342	0/1	t0001	2795	104	25	33	22	9	14	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	1/0	t0002	2794	27	12	10	1	0	3	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0003	2794	10	10	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0004	2793	8	8	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0005	2793	5	5	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0006	2794	4	4	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0007	2794	4	4	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0008	2794	3	3	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0009	2794	3	3	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0010	2794	3	1	1	0	1	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0011	2794	2	2	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0012	2795	2	2	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342