JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLPX_chr15_65143219_65190342	0/0	t0013	2795	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0014	2794	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0015	2795	1	0	0	1	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0016	2794	1	0	0	1	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0017	2792	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0018	2793	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0019	2794	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0020	2795	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0021	2795	1	0	0	0	0	1	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0022	2795	1	0	0	1	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0023	2795	1	0	0	0	1	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0024	2795	1	0	0	0	1	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0025	2794	1	0	1	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0026	2795	1	0	1	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	t0027	2794	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLRN1_chr3_150921567_150977727	0/1	t0001	1387	168	22	38	83	8	16	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	1/0	t0002	1389	83	3	14	40	5	20	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0003	1385	59	3	4	50	2	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0004	1389	21	13	1	6	0	1	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0005	1387	15	1	1	13	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0006	1385	13	8	3	1	1	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0007	1387	13	12	1	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0008	1387	11	9	2	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0009	1391	5	5	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0010	1391	3	0	0	1	0	2	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0011	1387	2	0	0	2	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0012	1387	2	1	1	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0013	1389	2	2	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0014	1385	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0015	1387	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0016	1387	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0017	1387	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0018	1387	1	0	0	1	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0019	1387	1	0	1	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0020	1389	1	0	0	1	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0021	1389	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0022	1401	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0023	1389	1	0	0	0	0	1	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	t0024	1389	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN2_chr4_17510165_17532104	1/1	t0001	125	440	96	76	204	18	44	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	t0002	125	2	2	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN3_chr10_127872841_127897941	1/1	t0001	466	394	86	74	177	16	39	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0002	466	39	7	6	23	1	2	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0003	466	11	0	0	6	0	5	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0004	466	2	2	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0005	466	2	0	0	0	0	2	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0006	466	2	0	0	2	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0007	466	2	0	1	0	1	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0008	466	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0009	466	1	0	1	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941