JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CLRN3_chr10_127872841_127897941	0/0	t0010	466	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	t0011	466	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLSPN_chr1_35727112_35774978	0/0	t0001	4494	80	8	12	56	1	3	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0002	4496	73	5	19	28	3	18	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/1	t0003	4494	32	16	2	11	0	2	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0004	4494	25	14	5	0	2	4	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0005	4495	11	2	1	7	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0006	4495	10	7	2	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0007	4494	8	6	0	2	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	1/0	t0008	4493	7	6	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0009	4489	5	5	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0010	4491	5	5	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0011	4494	4	4	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0012	4495	4	0	2	1	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0013	4495	3	3	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0014	4495	3	3	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0015	4494	3	3	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0016	4493	2	1	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0017	4494	2	2	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0018	4507	2	0	0	2	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0019	4494	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0020	4489	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0021	4494	1	0	0	0	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0022	4493	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0023	4493	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0024	4494	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0025	4495	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0026	4494	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0027	4494	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0028	4494	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0029	4494	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0030	4494	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0031	4489	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0032	4494	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0033	4494	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0034	4496	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	t0035	4493	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSTN1_chr1_9723926_9828965	0/1	t0001	1815	136	26	40	49	6	14	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0002	1815	65	25	9	25	2	4	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0003	1815	21	0	3	12	0	6	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0004	1815	19	17	2	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0005	1815	6	6	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0006	1815	5	2	2	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0007	1825	2	2	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0008	1815	2	2	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0009	1890	2	1	1	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0010	1815	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0011	1815	1	0	0	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	t0012	1815	1	0	0	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	1/0	t0013	1815	1	0	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965